Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs2934960 chr17:37817389 C/T 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs2934961 chr17:37819241 A/G 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs2934962 chr17:37820756 T/G 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs2934963 chr17:37820992 C/T 5.37E-6 494 30.8 32.45 28.63 KM Plot
PRAD rs2941510 chr17:37821770 C/T 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs2941511 chr17:37820175 A/G 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs2941512 chr17:37818871 T/G 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs2941513 chr17:37818561 T/C 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs2941514 chr17:37815475 A/G 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs2941515 chr17:37813338 T/C 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs2941523 chr17:37823761 C/G 3.07E-8 487 30.8 30.48 33.53 KM Plot
PRAD rs2952139 chr17:37813462 G/A 5.83E-6 491 30.78 33.05 28.63 KM Plot
PRAD rs2952149 chr17:37816461 T/C 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs2953173 chr2:241523907 T/A 0.000177 488 28.7 32.47 29.23 KM Plot
PRAD rs2953177 chr2:241516616 A/G 1.75E-9 490 25.37 31.93 30.33 KM Plot